FASTQ Illumina Filter

Description

Illumina CASAVA-1.8 FASTQ Filter is a program that can filter FASTQ files produced by CASAVA 1.8, and keep/discard reads based on this filter flag.

License

AGPL v3

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of fastq_illumina_filter and load default version of fastq_illumina_filter as

module avail fastq_illumina_filter/ # list available modules
module load fastq_illumina_filter   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail fastq_illumina_filter

and choose explicit version you want to use.

Homepage

URL: http://cancan.cshl.edu/labmembers/gordon/fastq_illumina_filter/