GenomeTools

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Description

The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules. Includes also the tool LTRdigest.

Availability

Version 1.6.1. Freely available to all users. The modules have names

genometools-1.3.3 (ltrdigest-1.3.3)
genometools-1.5.1-gcc (ltrdigest-1.5.1-gcc)

Licence

Free license based on OpenBSD model.

Use

You can load the module via the command

module add genometools-1.3.3

The module load makes available the program path and also paths to openmpi-1.6, which enables job parallelization.

Documentation

http://genometools.org/documentation.html and http://www.zbh.uni-hamburg.de/?id=207. Except that is available the LTRdigest manual. When not on web anymore, use the local copy in directory /software/ltrdigest-1.5.1/docs.

Program manager

meta@cesnet.cz

Homepage

http://genometools.org and http://www.zbh.uni-hamburg.de/?id=207