Flye

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Description

Flye is a de novo assembler for single molecule sequencing reads, such as those produced by PacBio and Oxford Nanopore Technologies. It is designed for a wide range of datasets, from small bacterial projects to large mammalian-scale assemblies. The package represents a complete pipeline: it takes raw PacBio / ONT reads as input and outputs polished contigs. Flye also has a special mode for metagenome assembly.

Availability

Versions 2.8 (module flye-2.8)

Use

module add flye-2.8

Documentation

https://github.com/fenderglass/Flye/blob/flye/README.md

Licence

BSD-3-Clause

Program manager

meta@cesnet.cz

Homepage

https://github.com/fenderglass/Flye