Minimap

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Description

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full-genome alignment between two closely related species with divergence below ~15%.

Availability

Version 2.15

Licence

The MIT License

Use

module add minimap-2.15
minimap2 --help

Documentation

https://github.com/lh3/minimap2#started

Homepage

https://github.com/lh3/minimap2

Program manager

meta@cesnet.cz