HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
Freely available to all users. Modules:
hmmer-3.2 hmmer-3.1b1-gcc hmmer-3.1b1-intel
You can load the module via the command
module add hmmer-3.1b1-gcc
This makes available the path to the program binaries, libraries and manual pages.
Documentation is available in manual pages or on http://hmmer.janelia.org/help.