HMMER

Z MetaCentrum
Přejít na: navigace, hledání


Description

HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).

Availability

Verze 3.1b1. Freely available to all users. Modules:

hmmer-3.1b1-gcc 
hmmer-3.1b1-intel

Licence

GPL v3

Use

You can load the module via the command

module add hmmer-3.1b1-gcc

This makes available the path to the program binaries, libraries and manual pages.

Documentation

Documentation is available in manual pages or on http://hmmer.janelia.org/help.

Program manager

meta@cesnet.cz

Homepage

http://hmmer.janelia.org/