Canu
Description
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). You can download a release. If you encounter any issues, please report them using the github issues page.
License
GNU General Public License, version 2
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of canu and load default version of canu as
module avail canu/ # list available modules module load canu # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail canu
and choose explicit version you want to use.
We recommend using this software with useGrid=false parameter because of its strange behavior using PBS.
Documentation
http://canu.readthedocs.org/en/stable/