Canu

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Description

Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). You can download a release. If you encounter any issues, please report them using the github issues page.

Availability

Freely available to all users. Modules:

canu-1.8+git
canu-1.8
canu-1.1

Use

module add canu-1.8+git
canu -h

We recommend using this software with useGrid=false parameter because of its strange behavior using PBS.

Documentation

http://canu.readthedocs.org/en/stable/

Licence

GNU General Public License, version 2

Program manager

meta@cesnet.cz

Homepage

http://canu.readthedocs.org/en/stable/index.html