CD-HIT

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Description

CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. It is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in understanding the data structure and correct the bias within a dataset.

Availability

Version 4.6.1. Freely available to users. Modules:

cdhit-4.6.1

Licence

GPLv2

Use

Initialize environment with command:

module add cdhit-4.6.1

Documentation

Documentation is at http://weizhong-lab.ucsd.edu/cd-hit/ref.php .

Program manager

meta@cesnet.cz

Homepage

http://weizhong-lab.ucsd.edu/cd-hit/