Spladder

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Description

SplAdder, short for Splicing Adder, a toolbox for alternative splicing analysis based on RNA-Seq alignment data. Briefly, the software takes a given annotation and RNA-Seq read alignments in standardized formats, transforms the annotation into a splicing graph representation, augments the splicing graph with additional information extracted from the read data, extracts alternative splicing events from the graph and quantifies the events based on the alignment data, The quantified events can then be used for differential analysis.

Category

Sequence data processing

Availability

Version 2.7

Licence

BSD Licence

Use

module add spladder-py2.7
spladder.py --help

Documentation

https://github.com/ratschlab/spladder/wiki

Homepage

https://github.com/ratschlab/spladder

Program manager

meta@cesnet.cz