FPC

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Description

FPC (FingerPrinted Contigs) takes as input a set of clones and their restriction fragments (called Bands) and assembles the clones into contigs.

Availability

Program is actually freely available to all users in version 9.4.

Module versions:

fpc-9.4

Licence

Unknown, but there is a citation request:

In any publication or poster that refers to fingerprinted contigs built with FPC, you will reference one of the following papers: Soderlund et al. 1997, Soderlund et al. 2000, Engler et al. 2003. The full references for these papers are on the previous page. If you refer to FPC from a web site, you will refer to the URL www.agcol.arizona.edu/software/fpc.

Use

Initialize environment by command

module add fpc-9.4

This makes available the path to program binary. There are also available tutorials in /software/fpc-9.4/tutorials directory.

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

User documentation is available in file /software/fpc-9.4/doc/FPChelpdoc.htm and at http://www.agcol.arizona.edu/software/fpc/#fpc webpage.

Program administrator

meta@cesnet.cz

Homepage

http://www.agcol.arizona.edu/software/fpc