FPC

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Description

FPC (FingerPrinted Contigs) takes as input a set of clones and their restriction fragments (called Bands) and assembles the clones into contigs.

License

Unknown, but there is a citation request:

In any publication or poster that refers to fingerprinted contigs built with FPC, you will reference one of the following papers: Soderlund et al. 1997, Soderlund et al. 2000, Engler et al. 2003. The full references for these papers are on the previous page. If you refer to FPC from a web site, you will refer to the URL www.agcol.arizona.edu/software/fpc.

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of fpc and load default version of fpc as

module avail fpc/ # list available modules
module load fpc   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail fpc

and choose explicit version you want to use.

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

User documentation is available in file /software/fpc-9.4/doc/FPChelpdoc.htm and at http://www.agcol.arizona.edu/software/fpc/#fpc webpage.

Homepage

http://www.agcol.arizona.edu/software/fpc