Interproscan

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Description

InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.

Availability

  • version 5.20-59.0 in module interproscan-5.20-59.0

Use

module add interproscan-5.20-59.0
interproscan.sh -T $SCRATCHDIR -i /path/to/sequences.fasta

By parameter -T is set temporary directory instead of /temp to $SCRATCHDIR (available disk space in /temp is limited). To use this parameter you must request a scratch in job's requirements. Argument -i is path to fasta file that should be loaded.

Number of used processors (workers) is set in the file interproscan.properties to 8, so with one master you should request for 9-10 CPUs.

Documentation

Licence

The InterProScan software is distributed under the open source Apache license, as are the included scanning tools (except SignalP and TMHMM). Therefore, you do not need a special license for commercial use but please cite the resource and keep the Copyright statement with your installation.

Program manager

meta@cesnet.cz

Homepage

https://www.ebi.ac.uk/interpro/