InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.
- version 5.20-59.0 in module
module add interproscan-5.20-59.0 interproscan.sh -T $SCRATCHDIR -i /path/to/sequences.fasta
By parameter -T is set temporary directory instead of
$SCRATCHDIR (available disk space in
/temp is limited). To use this parameter you must request a scratch in job's requirements. Argument -i is path to fasta file that should be loaded.
Number of used processors (workers) is set in the file
interproscan.properties to 8, so with one master you should request for 9-10 CPUs.
- IterProScan 5 user's guide https://github.com/ebi-pf-team/interproscan/wiki
The InterProScan software is distributed under the open source Apache license, as are the included scanning tools (except SignalP and TMHMM). Therefore, you do not need a special license for commercial use but please cite the resource and keep the Copyright statement with your installation.