Maker

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Description

MAKER is a portable and easily configurable genome annotation pipeline. Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-initio gene predictions and automatically synthesizes these data into gene annotations having evidence-based quality values.

Availability

Version 2.28. Freely available to users. Modules:

maker-2.28

Licence

GPLv3 and Artistic licence 2.0

Use

Initialize environment with command:

module add maker-2.28

Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page How to compute/Parallelization.

Documentation

Documentation is at http://www.yandell-lab.org/software/maker_docs.html

Program manager

meta@cesnet.cz

Homepage

http://www.yandell-lab.org/software/maker.html