Maker
Description
MAKER is a portable and easily configurable genome annotation pipeline. Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to a genome, produces ab-initio gene predictions and automatically synthesizes these data into gene annotations having evidence-based quality values.
Availability
Version 2.28. Freely available to users. Modules:
maker-2.28
Licence
GPLv3 and Artistic licence 2.0
Use
Initialize environment with command:
module add maker-2.28
Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page How to compute/Parallelization.
Documentation
Documentation is at http://www.yandell-lab.org/software/maker_docs.html
