Gemtools
Description
The GEM library strives to be a true "next-generation" tool for handling any kind of sequence data, offering state-of-the-art algorithms and data structures specifically tailored to this demanding task. At the moment, efficient indexing and searching algorithms based on the Burrows-Wheeler transform (BWT) have been implemented.
License
GEM is free for academic non-commercial use
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of gemtools and load default version of gemtools as
module avail gemtools/ # list available modules module load gemtools # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail gemtools
and choose explicit version you want to use.
Documentation
http://algorithms.cnag.cat/wiki/The_GEM_library#Documentation