PartitionFinder is free open source software to select best-fit partitioning schemes and models of molecular evolution for phylogenetic analyses. Most of the lab's coding output currently goes into PartitionFinder.
Application is available in
partitionfinder-1.1.1: Version 1.1.1
Steps to run the application
$ module add partitionfinder-1.1.1 $ PartitionFinder.py
You can run the application by typing
PartitionFinder.py instead of
python PartitionFinder.py which is used in the manual. To see other parameters of PartitionFinder type
In the same manner you can run
choooseK.py. If you would like to run
distruct.py you have to use graphical environment. To work with graphical application you can run command
module add gui followed by the command
gui start). More information about the remote desktop you can find at https://wiki.metacentrum.cz/wiki/Remote_desktop
GNU General Public licence version 3.