PartitionFinder

Description

PartitionFinder is free open source software to select best-fit partitioning schemes and models of molecular evolution for phylogenetic analyses. Most of the lab's coding output currently goes into PartitionFinder.

Availability

Application is available in

• Module partitionfinder-1.1.1: Version 1.1.1

Use

Steps to run the application

$ module add partitionfinder-1.1.1
$ PartitionFinder.py

You can run the application by typing PartitionFinder.py instead of python PartitionFinder.py which is used in the manual. To see other parameters of PartitionFinder type PartitionFinder.py --help. In the same manner you can run choooseK.py. If you would like to run distruct.py you have to use graphical environment. To work with graphical application you can run command module add gui followed by the command gui start). More information about the remote desktop you can find at https://wiki.metacentrum.cz/wiki/Remote_desktop

Documentation

Manuál 1.1.1 and http://www.robertlanfear.com/partitionfinder/tutorial/

Licence

GNU General Public licence version 3.

Program administrator

meta@cesnet.cz

Homepage

URL: http://www.robertlanfear.com/partitionfinder URL: https://github.com/roblanf/partitionfinder