Supernova

Description

Supernova is a software package for de novo assembly from Chromium Linked-Reads that are made from a single whole-genome library from an individual DNA source. A key feature of Supernova is that it creates diploid assemblies, thus separately representing maternal and paternal chromosomes over very long distances. Almost all other methods instead merge homologous chromosomes into single incorrect 'consensus' sequences. Supernova is the only practical method for creating diploid assemblies of large genomes.

License

https://support.10xgenomics.com/docs/license

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of supernova and load default version of supernova as

module avail supernova/ # list available modules
module load supernova   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail supernova

and choose explicit version you want to use.

Documentation

https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome

Homepage

https://support.10xgenomics.com/de-novo-assembly/software/overview/latest/welcome