Genoman

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Description

Genoman (short for genome analysis) is an object-oriented Perl library for accessing and manipulating genome annotation data (e.g. genomic locations of genes and other features, alignments of transcript sequences to a genome, and alignments between different genomes). Genoman defines a set of classes for representing such data. The classes are designed to be flexible and sufficiently efficient to allow their use in analysis pipelines for dealing with large data sets.

Category

Annotation

Availability

Revision 546

Licence

Genoman is Copyright (C) 2008 by Par Engstrom. It is free software; you can redistribute it and/or modify it under the same terms as Perl itself (see http://dev.perl.org/licenses/).

Use

module add genoman

Documentation

http://www.ebi.ac.uk/%7Eengstrom/genoman/pdoc/

Homepage

http://www.ebi.ac.uk/%7Eengstrom/genoman/

Program manager

meta@cesnet.cz