Genoman
Description
Genoman (short for genome analysis) is an object-oriented Perl library for accessing and manipulating genome annotation data (e.g. genomic locations of genes and other features, alignments of transcript sequences to a genome, and alignments between different genomes). Genoman defines a set of classes for representing such data. The classes are designed to be flexible and sufficiently efficient to allow their use in analysis pipelines for dealing with large data sets.
License
Genoman is Copyright (C) 2008 by Par Engstrom. It is free software; you can redistribute it and/or modify it under the same terms as Perl itself (see http://dev.perl.org/licenses/).
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of genoman and load default version of genoman as
module avail genoman/ # list available modules module load genoman # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail genoman
and choose explicit version you want to use.
Documentation
http://www.ebi.ac.uk/%7Eengstrom/genoman/pdoc/