Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data.
The pre-processing tools for genome assembling, called Platnaus_trim and Platanus_internal_trim are now available. Platanus_trim is a tool for trimming adaptor sequences and low quality regions. In contrast, Platanus_internal_trim is a tool for trimming internal adaptor sequence, adaptor sequences, and low quality regions. Platanus_trim is designed for paired-end library and Platanus_internal_trim is for mate-pair library.
module add platanus-1.2.4