Platanus

Z MetaCentrum
Přejít na: navigace, hledání

Description

Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data.

The pre-processing tools for genome assembling, called Platnaus_trim and Platanus_internal_trim are now available. Platanus_trim is a tool for trimming adaptor sequences and low quality regions. In contrast, Platanus_internal_trim is a tool for trimming internal adaptor sequence, adaptor sequences, and low quality regions. Platanus_trim is designed for paired-end library and Platanus_internal_trim is for mate-pair library.

Availability

Modules available:

platanus-1.2.4

Licence

???

Use

module add platanus-1.2.4

Documentation

Homepage

Program manager

meta@cesnet.cz