RepeatModeler
Description
RepeatModeler is a de-novo repeat family identification and modeling package.
License
Open Source License v2.1. Before use, you have to agree with the RepeatMasker licence.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of repeatmodeler and load default version of repeatmodeler as
module avail repeatmodeler/ # list available modules module load repeatmodeler # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail repeatmodeler
and choose explicit version you want to use.
RepeatModeler version 2.0.2 (and newer) is available via TE Tools package