Miniasm
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Description
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Availability
Versions 0.2 and 0.3 are freely available to users.
miniasm-0.2 miniasm-0.3
Licence
Use
Initialize environment with command:
module add miniasm-0.3 miniasm
Documentation
miniasm --help
