Coot
Description
Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data. Coot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more.
License
Mostly GPLv3, some GLPv2+, some LGPLv3.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of coot and load default version of coot as
module avail coot/ # list available modules module load coot # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail coot
and choose explicit version you want to use.
Despite the Coot is graphics program, it needs GUI (therefore there is needed gui module). More information about running GUI application in MetaCentrum you can find at the page Remote Desktop