Repliscan

Description

Detects and classifies regions of replication across the genome. Repliscan normalizes automatically, removes outlying and uninformative data points, and classifies Repli-seq signals into discrete combinations of replication signatures. This tool can analyze generic, DNA sequence-based replication timing data, and removes uninformative or outlying data, smooths replication peaks, and classifies regions of the genome by replication time.

License

Public

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of repliscan and load default version of repliscan as

module avail repliscan/ # list available modules
module load repliscan   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail repliscan

and choose explicit version you want to use.

Documentation

module add repliscan-0.1

Homepage

module add repliscan-0.1