DnaPipeTE

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Description

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets

Availability

version 1.3


Use

module add dnapipete-1



Documentation

https://github.com/clemgoub/dnaPipeTE


Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://github.com/clemgoub/dnaPipeTE