MP-EST

Description

MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function. The input data of MP-EST are rooted binary gene trees produced by the maximum likelihood phylogenetic programs RAxML, PHYML, PHYLIP, and PAUP etc. In addition to the gene tree file, a control file must be generated for running MP-EST. The control file contains necessary parameters for running MP-EST.

Availability

Version 1.4 and 1.5. Available modules:

mpest-1.5
mpest-1.4

Use

module add mpest-1.4
module add mpest-1.5

Documentation

https://faculty.franklin.uga.edu/lliu/content/mp-est

Licence

GNU GPL v2 licence

Program manager

meta@cesnet.cz

Homepage

• https://faculty.franklin.uga.edu/lliu/content/mp-est
• https://code.google.com/p/mp-est/