MP-EST

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Description

MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function. The input data of MP-EST are rooted binary gene trees produced by the maximum likelihood phylogenetic programs RAxML, PHYML, PHYLIP, and PAUP etc. In addition to the gene tree file, a control file must be generated for running MP-EST. The control file contains necessary parameters for running MP-EST.

Availability

Version 1.5. Available modules:

mpest-1.5

Use

module add mpest-1.5

Documentation

https://faculty.franklin.uga.edu/lliu/content/mp-est

Licence

GNU GPL v2 licence

Program manager

meta@cesnet.cz

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