Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity.
module avail porechop-0.2.4/ # list available modules module load porechop-0.2.4 # load (default) module
# Show help dialog of the 'Porechop' executable porechop-runner.py --help