Porechop

From MetaCentrum
Jump to navigation Jump to search


Description

Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads. Porechop performs thorough alignments to effectively find adapters, even at low sequence identity.

License

GNU General Public License (version 3

Usage

module avail porechop-0.2.4/ # list available modules
module load porechop-0.2.4   # load (default) module

 # Show help dialog of the 'Porechop' executable
 porechop-runner.py --help

Documentation

https://github.com/rrwick/Porechop#install-from-source

Homepage

https://github.com/rrwick/Porechop#install-from-source