Piranha is a peak-caller for CLIP- and RIP-Seq data. It takes input in BED or BAM format and identifies regions of statistically significant read enrichment. Additional covariates may optionally be provided to further inform the peak-calling process.
Piranha is available in these versions:
1.2.1 (includes BAM support via Bamtools)
# First, load the modulefile to prepare the environment module add piranha-1.2.1 # Show help dialog of the 'Piranha' executable Piranha -help # Show help dialog of the 'Simulate' executable Simulate -help