Piranha

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Description

Piranha is a peak-caller for CLIP- and RIP-Seq data. It takes input in BED or BAM format and identifies regions of statistically significant read enrichment. Additional covariates may optionally be provided to further inform the peak-calling process.

Availability

Piranha is available in these versions:

  • 1.2.1 (includes BAM support via Bamtools)

Use

 # First, load the modulefile to prepare the environment
 module add piranha-1.2.1

 # Show help dialog of the 'Piranha' executable
 Piranha -help

 # Show help dialog of the 'Simulate' executable
 Simulate -help


Documentation

http://smithlabresearch.org/software/piranha/

Licence

GNU General Public License (version 3

Program manager

meta@cesnet.cz

Homepage

http://smithlabresearch.org/software/piranha/