Detonate

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Description

DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL. Both packages are mainly intended to be used to evaluate de novo transcriptome assemblies, although REF-EVAL can be used to compare sets of any kinds of genomic sequences.

Availability

Program is available in version 1.11

Use

Initialize enviroment ("module add detonate-1.11").

Licence

GNU GPL.

Documentation

http://deweylab.biostat.wisc.edu/detonate/

Program manager

meta@cesnet.cz

Homepage

http://deweylab.biostat.wisc.edu/detonate/