SGA
Description
SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
License
Freely available for every user. GNU/GPL v3
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of sga and load default version of sga as
module avail sga/ # list available modules module load sga # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail sga
and choose explicit version you want to use.
Documentation
Documentation is available at SGA wiki, first steps are in README file.