SGA

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Description

SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.

Availability

Version 0.10.13, 0.10.15

Licence

Freely available for every user. GNU/GPL v3

Use

Initialize module with command:

module add sga-0.10.13
module add sga-0.10.15

Documentation

Documentation is available at SGA wiki, first steps are in README file.

Program manager

meta@cesnet.cz

Homepage

https://github.com/jts/sga