GARLI
Description
GARLI (Genetic Algorithm for Rapid Likelihood Inference) is a program that performs phylogenetic inference using the maximum-likelihood criterion. Several sequence types are supported, including nucleotide, amino acid and codon.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of garli and load default version of garli as
module avail garli/ # list available modules module load garli # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail garli
and choose explicit version you want to use. or Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of garliMPI and load default version of garliMPI as
module avail garliMPI/ # list available modules module load garliMPI # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail garliMPI
and choose explicit version you want to use.
Documentation
Documentation is available on WWW server.