Bedtools

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Description

Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic: that is, set theory on the genome. For example, bedtools allows one to intersect, merge, count, complement, and shuffle genomic intervals from multiple files in widely-used genomic file formats such as BAM, BED, GFF/GTF, VCF.

Availability

Version 2.17, 2.23 and 2.26

Licence

GNU GPL v2

Use

You can load the module via the command

module add bedtools-2.17
module add bedtools-2.23.0
module add bedtools-2.26.0

This makes available the path to the program binaries and loads also the SAMtools module.

Documentation

http://bedtools.readthedocs.org/en/latest/index.html

Program manager

meta@cesnet.cz

Homepage

http://bedtools.readthedocs.org/en/latest/index.html