NtJoin

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Description

ntJoin takes a target assembly and one or more 'reference' assembly as input, and uses information from the reference(s) to scaffold the target assembly. The 'reference' assemblies can be true reference assembly builds, or a different draft genome assemblies.

Licence

Public

Use

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of ntjoin and load default version of ntjoin as

module avail ntjoin/ # list available modules
module load ntjoin   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail ntjoin

and choose explicit version you want to use.

Documentation

https://github.com/bcgsc/ntJoin

Homepage

https://github.com/bcgsc/ntJoin