NtJoin

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Description

ntJoin takes a target assembly and one or more 'reference' assembly as input, and uses information from the reference(s) to scaffold the target assembly. The 'reference' assemblies can be true reference assembly builds, or a different draft genome assemblies.

Instead of using costly alignments, ntJoin uses a more lightweight approach using minimizer graphs to yield a mapping between the input assemblies.

Availability

version 1.0.1


Use

module add ntjoin-1.0.1

ntJoin --help


Documentation

https://github.com/bcgsc/ntJoin


Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://github.com/bcgsc/ntJoin