Haslr

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Description

HASLR is a tool for rapid genome assembly of long sequencing reads. HASLR is a hybrid tool which means it requires long reads generated by Third Generation Sequencing technologies (such as PacBio or Oxford Nanopore) together with Next Generation Sequencing reads (such as Illumina) from the same sample. HASLR is capable of assembling large genomes on a single computing node. Our experiments show that it can assemble a CHM1 human dataset in less than 10 hours using 64 CPU threads.

Availability

version 0.8a1


Use

module add conda-modules-py37

conda activate haslr-0.8a1


Documentation

https://github.com/vpc-ccg/haslr#about


Licence

Public

Program manager

meta@cesnet.cz

Homepage

https://github.com/vpc-ccg/haslr#about