MALT

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Description

MALT (MEGAN alignment tool) is an extension of MEGAN (metagenome analyzer).

MALT performs alignment of metagenomic reads against a database of reference sequences (such as NR, GenBank or Silva) and produces a MEGAN RMA file as output. The software is currently under development.

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of malt and load default version of malt as

module avail malt/ # list available modules
module load malt   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail malt

and choose explicit version you want to use.

Documentation

https://ab.inf.uni-tuebingen.de/software/malt