SEECER

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Description

SEECER is a sequencing error correction algorithm for RNA-seq data sets. It takes the raw read sequences produced by a next generation sequencing platform like machines from Illumina or Roche. SEECER removes mismatch and indel errors from the raw reads and significantly improves downstream analysis of the data. Especially if the RNA-Seq data is used to produce a de novo transcriptome assembly, running SEECER can have tremendous impact on the quality of the assembly.

Availability

Version 0.1.3

Licence

GNU GPL 3

Use

module add seecer-0.1.3
seecer

Documentation

http://sb.cs.cmu.edu/seecer/downloads/manual.pdf

Program manager

meta@cesnet.cz

Homepage

http://sb.cs.cmu.edu/seecer