Exonerate
Description
Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, either exhaustive dynamic programming or a variety of heuristics.
License
GNU GPL v3 licence
Use
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of exonerate and load default version of exonerate as
module avail exonerate/ # list available modules module load exonerate # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail exonerate
and choose explicit version you want to use.
Available programs
- esd2esi
- exonerate
- exonerate-server
- fasta2esd
- fastaannotatecdna
- fastachecksum
- fastaclean
- fastaclip
- fastacomposition
- fastadiff
- fastaexplode
- fastafetch
- fastahardmask
- fastaindex
- fastalength
- fastanrdb
- fastaoverlap
- fastareformat
- fastaremove
- fastarevcomp
- fastasoftmask
- fastasort
- fastasplit
- fastasubseq
- fastatranslate
- fastavalidcds
- ipcress
Documentation
https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate-user-guide