Exonerate

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Description

Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, either exhaustive dynamic programming or a variety of heuristics.

Availability

Version 2.2.0. Available modules:

exonerate-2.2.0

Use

module add exonerate-2.2.0

Available programs

  • esd2esi
  • exonerate
  • exonerate-server
  • fasta2esd
  • fastaannotatecdna
  • fastachecksum
  • fastaclean
  • fastaclip
  • fastacomposition
  • fastadiff
  • fastaexplode
  • fastafetch
  • fastahardmask
  • fastaindex
  • fastalength
  • fastanrdb
  • fastaoverlap
  • fastareformat
  • fastaremove
  • fastarevcomp
  • fastasoftmask
  • fastasort
  • fastasplit
  • fastasubseq
  • fastatranslate
  • fastavalidcds
  • ipcress

Documentation

https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate-user-guide

Licence

GNU GPL v3 licence

Program manager

meta@cesnet.cz

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