EXpress

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Description

eXpress is a streaming tool for quantifying the abundances of a set of target sequences from sampled subsequences. Example applications include transcript-level RNA-Seq quantification, allele-specific/haplotype expression analysis (from RNA-Seq), transcription factor binding quantification in ChIP-Seq, and analysis of metagenomic data.

Availability

Version 1.5.1

Use

module add express-1.5.1

for more details see Documentation.


Documentation

http://bio.math.berkeley.edu/eXpress/manual.html

Licence

Artistic License 2.0

Program manager

meta@cesnet.cz

Homepage

http://bio.math.berkeley.edu/eXpress/index.html