HDF5
Description
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. The HDF5 Technology suite includes tools and applications for managing, manipulating, viewing, and analyzing data in the HDF5 format.
License
Use
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of hdf5 and load default version of hdf5 as
module avail hdf5/ # list available modules module load hdf5 # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail hdf5
and choose explicit version you want to use.
Notice: This application supports parallel computing (MPI, OpenMP) which can have weird consequences. For more details about parallel computing visit the page Parallelization.
- Without MPI support
hdf5-1.8.4p1 (gcc compilation)
- With OpenMPI support
hdf5-1.8.12-gcc hdf5-1.8.12-intel hdf5-1.8.12-pgi hdf5-1.8.14-gcc hdf5-1.8.14-intel hdf5-1.10.0-gcc hdf5-1.10.0-intel hdf5-1.10.0-mvapich-intel
Documentation
Documentation is at http://www.hdfgroup.org/documentation.