BBMap

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Description

Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. Very fast.

Availability

Version 36.92 and 38.42

Use

module add bbmap-38.42 

This makes available the path to the program binaries.

Documentation

https://sourceforge.net/projects/bbmap/files/?source=navbar

Licence

The BBMap package is open source and free to use with no restrictions.

Program manager

meta@cesnet.cz

Homepage

https://sourceforge.net/projects/bbmap/?source=navbar