Edena

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Description

Edena is an overlaps-graph based de novo assembler dedicated to process the Illumina GA paired-end (short inserts) and mate-pairs (long inserts) dataset.

License

GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of edena and load default version of edena as

module avail edena/ # list available modules
module load edena   # load (default) module


If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail edena

and choose explicit version you want to use.

Documentation

File:Edena_ReferenceManual.pdf

Homepage

http://www.genomic.ch/edena.php