ADMIXTURE
Description
ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of orca and load default version of orca as
module avail orca/ # list available modules module load orca # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail orca
and choose explicit version you want to use.
admixture --help
Documentation
https://dalexander.github.io/admixture/admixture-manual.pdf