Guppy

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Description

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies' basecalling algorithms, and several bioinformatic post-processing features.

Availability

Versions 3.0.3, 3.4.5 and 3.5.1 are available only after

guppy-3.0.3 (v. 3.0.3+7e7b7d0)
guppy-3.4.5 (v. 3.4.5+fb1fbfb)
guppy-3.5.1 (v. 3.5.1+efc2d93)
guppy-3.6.0 (v. 3.6.0+98ff765)

Notice: To use the application you first need to accept it's licence.

Warning.gif WARNING: Please be aware that Guppy basecaller requires nodes with GPU.

Use

module add guppy-3.6.0
guppy_basecaller --help

Documentation

https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revp_14dec2018/guppy-software-overview

Licence

General Nanopore Product Terms and Conditions

Program manager

meta@cesnet.cz