Salmon

Description

Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify. All you need to run Salmon is a FASTA file containing your reference transcripts and a (set of) FASTA/FASTQ file(s) containing your reads. Optionally, Salmon can make use of pre-computed alignments (in the form of a SAM/BAM file) to the transcripts rather than the raw reads.

Availability

versions 0.7.2 and 0.9.1

Use

module add salmon-0.7.2
module add salmon-0.9.1

This makes available the path to the program binaries.

Documentation

http://salmon.readthedocs.io/en/latest/salmon.html

Licence

 GNU General Public License

Program manager

meta@cesnet.cz

Homepage

http://salmon.readthedocs.io/en/latest/index.html https://github.com/COMBINE-lab/salmon