Salmon
From MetaCentrum
Description
Salmon is a tool for wicked-fast transcript quantification from RNA-seq data. It requires a set of target transcripts (either from a reference or de-novo assembly) to quantify. All you need to run Salmon is a FASTA file containing your reference transcripts and a (set of) FASTA/FASTQ file(s) containing your reads. Optionally, Salmon can make use of pre-computed alignments (in the form of a SAM/BAM file) to the transcripts rather than the raw reads.
Availability
versions 0.7.2 and 0.9.1
Use
module add salmon-0.7.2 module add salmon-0.9.1
This makes available the path to the program binaries.
Documentation
http://salmon.readthedocs.io/en/latest/salmon.html
Licence
GNU General Public License
Program manager
Homepage
http://salmon.readthedocs.io/en/latest/index.html https://github.com/COMBINE-lab/salmon
