Masurca

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Description

MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454).

Availability

Version 3.2.6 (optimalized for running locally, not using AFS) is freely available to users. Module:

masurca-3.2.6loc9

Licence

GPLv3

Use

Initialize environment with command:

module add masurca-3.2.6loc9

Masurca is quite greedy sw, use

-l place=exclhost

in qsub.

Documentation

http://genome.umd.edu/masurca.html

Program manager

meta@cesnet.cz

Homepage

http://genome.umd.edu/masurca.html