SNPhylo

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Description

Phylogenetic tree is a good tool to infer evolutionary relationships among various organisms so the tree has been used in many evolutionary studies. Consequently, phylogenetic tree based on SNP data have been determined in resequencing projects. However, there was no simple way to determine phylogenetic tree with the huge number of variants determined from resequencing data. Thus, we had developed new pipeline, SNPhylo, to construct phylogenetic tree based on SNP data. With this pipeline, user can construct a phylogenetic tree from a file containing huge SNP data.

License

Public

Usage

module avail snphylo/ # list available modules
module load snphylo   # load (default) module

Documentation

https://github.com/thlee/SNPhylo

Homepage

https://github.com/thlee/SNPhylo