Bayescan

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Description

This program, BayeScan aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. BayeScan is based on the multinomial-Dirichlet model. One of the simplest possible scenarios covered consists of an island model in which subpopulation allele frequencies are correlated through a common migrant gene pool from which they differ in varying degrees. The difference in allele frequency between this common gene pool and each subpopulation is measured by a subpopulation specific FST coefficient. Therefore, this formulation can consider realistic ecological scenarios where the effective size and the immigration rate may differ among subpopulations.

Availability

Version Version 2.1

Licence

GNU GPL.

Use

You can load the module via the command

module add bayescan-2.1 

This makes available the path to the program binaries

Documentation

http://cmpg.unibe.ch/software/BayeScan/files/BayeScan2.0_manual.pdf

Program manager

meta@cesnet.cz

Homepage

http://cmpg.unibe.ch/software/BayeScan/index.html