SOAPdenovo-trans

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Description

SOAPdenovo-Trans is a de novo transcriptome assembler basing on the SOAPdenovo framework, adapt to alternative splicing and different expression level among transcripts.The assembler provides a more accurate, complete and faster way to construct the full-length transcript sets.

Availability

  • version 1.04 (module soapdenovo-trans-1.04) -- SOAPdenovo-trans version 1.04

Usage

Load the module (module add soapdenovo-trans-1.04) and use the available tools (SOAPdenovo-127mer, SOAPdenovo-63mer, SOAPdenovo-31mer) in accordance with the program documentation.

Documentation

Documentation is available on official website. Help and instruction manual is also a part of the package. https://github.com/aquaskyline/SOAPdenovo-Trans

Licence

GNU GPL 3

Supported platforms

Linux x86_64

Program administrator


Homepage

URL: http://soap.genomics.org.cn/SOAPdenovo-Trans.html http://soap.genomics.org.cn/