Last

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Description

  • LAST finds similar regions between sequences. LAST can:
  • Handle big sequence data, e.g:
    • Compare two vertebrate genomes
    • Align billions of DNA reads to a genome
  • Indicate the reliability of each aligned column.
  • Use sequence quality data properly.
  • Compare DNA to proteins, with frameshifts.
  • Compare PSSMs to sequences
  • Calculate the likelihood of chance similarities between random sequences.

Availability

Version 621(intel + gcc compilers)

Licence

Not specified.

Use

module add last-621
lastdb

Documentation

http://last.cbrc.jp/

Program manager

meta@cesnet.cz

Homepage

http://last.cbrc.jp/