Clview

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Description

This is a graphical, interactive tool for inspecting the ACE format assembly files generated by CAP3 or phrap. Beasides the ACE files, the program also supports a custom cluster layout format for the overview of a possible multiple alignments generated just from pairwise alignments, where no detailed nucleotide level alignment is needed and provided. The "containment clustering" program (nrcl) mentioned in the TGI Clustering tools(TGICL) above can generate such a "cluster layout" file (*.lyt).

Availability

Version 2010. Freely available for every user.

Licence

Free Artistic Licence

Use

Initialize module with command:

module add clview-2010

Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.

Documentation

No documentation available.

Program manager

meta@cesnet.cz

Homepage

http://compbio.dfci.harvard.edu/tgi/software/