Clview
Description
This is a graphical, interactive tool for inspecting the ACE format assembly files generated by CAP3 or phrap. Beasides the ACE files, the program also supports a custom cluster layout format for the overview of a possible multiple alignments generated just from pairwise alignments, where no detailed nucleotide level alignment is needed and provided. The "containment clustering" program (nrcl) mentioned in the TGI Clustering tools(TGICL) above can generate such a "cluster layout" file (*.lyt).
License
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of clview and load default version of clview as
module avail clview/ # list available modules module load clview # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail clview
and choose explicit version you want to use.
Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.
Documentation
No documentation available.