Rstudio
Description
RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management.
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Notice: It is very convenient to use OnDemand to run this graphical application as interactive job.
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RStudio for PBS is prepared with singularity image and scripts in location /cvmfs/singularity.metacentrum.cz/RStudio/
Use commnand for running the the job.
qsub /cvmfs/singularity.metacentrum.cz/RStudio/RStudio4.1.2_Job.sh
The job will send you email with URL and credentials to login. See header of the file for requested resources, versiom of R etc. and user can copy and cresate own version.
Script to execute within interactive job id
RStudio4.1.2_InteractiveJob.sh
Note: The end of session in web browser does not quit the job. For deleteing the job use command qdel JOBID
License
AGPL 3
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of rstudio and load default version of rstudio as
module avail rstudio/ # list available modules module load rstudio # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail rstudio
and choose explicit version you want to use.
Notice: This application use or needs GUI – graphical interface. To use the application in graphical mode see Remote desktop or X-Window.
Documentation
https://support.rstudio.com/hc/en-us/categories/200035113-Documentation