Fastq Pair

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Rewrite paired end fastq files to make sure that all reads have a mate and to separate out singletons.


MIT License


Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/

to your script before loading a module. Then, you can list all versions of fastq-pair and load default version of fastq-pair as

module avail fastq-pair/ # list available modules
module load fastq-pair   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail fastq-pair

and choose explicit version you want to use.

fastq_pair [options] [fastq file 1] [fastq file 2]