WGS

Description

Celera Assembler is a de novo whole-genome shotgun (WGS) DNA sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary data produced by whole-genome shotgun sequencing.

This software is not supported anymore.

License

GNU GPL 2

Usage

Upcoming modulesystem change alert!

Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.

You can test the new version now by adding a line

source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules

to your script before loading a module. Then, you can list all versions of owgs and load default version of owgs as

module avail owgs/ # list available modules
module load owgs   # load (default) module

If you wish to keep up to the current system, it is still possible. Simply list all modules by

module avail owgs

and choose explicit version you want to use.

Documentation

http://wgs-assembler.sourceforge.net/wiki/index.php/Help

Homepage

http://wgs-assembler.sourceforge.net/wiki/index.php?title=Main_Page