VSEARCH
Description
VSEARCH is an alternative to the USEARCH tool USEARCH The new tool should: have open source code with an appropriate open source license; be free of charge, gratis; have a 64-bit design that handles very large databases and much more than 4GB of memory; be as accurate or more accurate than usearch; be as fast or faster than usearch.
License
GNU GPL 3 and BSD 2-Clause License
Usage
Upcoming modulesystem change alert!
Due to large number of applications and their versions it is not practical to keep them explicitly listed at our wiki pages. Therefore an upgrade of modulefiles is underway. A feature of this upgrade will be the existence of default module for every application. This default choice does not need version number and it will load some (usually latest) version.
You can test the new version now by adding a line
source /cvmfs/software.metacentrum.cz/modulefiles/5.1.0/loadmodules
to your script before loading a module. Then, you can list all versions of vsearch and load default version of vsearch as
module avail vsearch/ # list available modules module load vsearch # load (default) module
If you wish to keep up to the current system, it is still possible. Simply list all modules by
module avail vsearch
and choose explicit version you want to use.
Documentation
https://github.com/torognes/vsearch/blob/master/README.md